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Department of Mathematics
University of Houston



Scientific Computing Seminar



Professor Andrea Bonito
Texas A&M University
Department of Mathematics

Parametric AFEM for biomembranes


Thursday, October 29, 2009
3 PM - 4 PM
Room 646 PGH
$ ^*$Note: Different Location

Abstract:

When lipid molecules are immersed in aqueous environment they aggregate spontaneously into 2 mono-molecular layers or (bio)membranes that form an encapsulating bag called vesicle. This happens because lipids consist of a hydrophilic head group and a hydrophobic tail, which isolate itself in the interior of the membrane. As a first approach, we have studied a model based on geometry assuming that the equilibrium shapes are the minimizers of the Willmore energy under area and volume constraints. In this context, the biomembrane is the preponderant factor influencing the shape of the vesicle. We propose a new model derived from basic shape differential calculus. A $ L^2$-gradient flow is established to reach these equilibrium shapes. Then, the effect of the inside (bulk) fluid is taken into account leading to more physical dynamics. The boundary conditions couple Stokes equations to the constrained Willmore force. Forth order, highly nonlinear arising problems are solved using an adaptive finite element method (AFEM). We analyse the method and present numerical simulations. We finally insist on a new paradigm of adaptivity on manifolds. We discuss how to execute mesh modifications with incomplete information about their geometry and yet preserve position and curvature accuracy. We refer to this as geometrically consistent mesh modification. We present the concept of discrete geometric consistency, show the failure of naive approaches, propose and analyze a simple geometrically consistent algorithm.

This is joint work with R.H. Nochetto and M.S. Pauletti.

This seminar is easily accessible to persons with disabilities. For more information or for assistance, please contact the Mathematics Department at 743-3500.




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Tsorng-Whay Pan 2009-10-05