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Papers in regular
journals and preprints
- A.
Veliz-Cuba, H. Shouval, K.
Josić*, and Z. Kilpatrick*. ``Networks
that learn the precise timing of event sequences.'' Submitted
(2014).
- J. Trousdale,
S. Carroll, F. Gabbiani, and K.
Josić,
"Near-optimal
decoding of transient stimuli from coupled neuronal subpopulations."
To
appear in the Journal of
Neuroscience (2014).
- J.K.
Kim, K.
Josić, and M. Bennett. "The validity of quasi
steady-state
approximations in discrete stochastic simulations." Biophysical Journal 107:3, p. 783 (2014).
- C. Gupta, M.
Lopez, R. Azencott, M. Bennett, K. Josić, and W. Ott. "Modeling
delay
in
genetic
networks:
From delay birth-death processes to delay
stochastic differential equations." Journal of Chemical Physics 140:204108 (2014).
- J.K. Kim, Z.
Kilpatrick, M. Bennett, and K.
Josić. "Molecular mechanisms that
regulate the coupled period of the mammalian circadian clock." Biophysical Journal, 106: 9,
p. 2071 (2014).
- Y. Hu, J.
Trousdale, K.
Josić, and E. Shea-Brown. ``Local
paths to global coherence: Cutting networks down to size.'' Physical Review E 89:032802
(2014).
- F. Hussain,
C. Gupta, A. J. Hirning, W. Ott, K. Matthews, K. Josić, and M. Bennet.
``Engineered temperature
compensation in a synthetic genetic clock.'' Proceedings of
the National Academy of Sciences 111:3,
p. 972 (2014).
- S. Carroll, K.
Josić,
and Z. Kilpatrick. "Encoding certainty in bump attractors.''
To
appear
in
the
Journal of
Computational Neuroscience (2013).
- A.
Veliz-Cuba, A. Kumar, and
K. Josić. ``Piecewise linear and Boolean models of
chemical reaction networks.'' Submitted to the Bulletin of Matheamtical Biology
76:2945–2984
(2014).
- J. Trousdale,
Y. Hu, E.
Shea-Brown, and K. Josić. ``A
generative
spike
train
model
with
time-structured
higher order
correlations.'' Frontiers in
Computational Neuroscience 7:84 (2013).
- C. Gupta, M
Lopez, W. Ott, K.
Josić, and M. Bennett. ``Delay Stabilizes Bistable
Systems.'' Physical Review
Letters, vol. 111, 058104.
- Y. Hu, J.
Trousdale, K.
Josić,
and E. Shea-Brown. ``Motif Statistics and Spike
Correlations in Neuronal Networks.'' Journal of Statistical Physics
P03012
(2013).
- A. Hazra, R.
Rosenbaum, B.
Bodmann, S. Kao, K. Josić, and J. Žiburkus. "β-Adrenergic
modulation
of
spontaneous
spatiotemporal
activity
patterns
and
synchrony
in hyperexcitable hippocampal circuits". Journal of Neurophysiology,
108:2, pp. 658-671 (2012).
- E. A.
Pnevmatikakis, K.
Kelleher, R. Chen, P. Saggau, K. Josić, and L. Paninski. “Fast
spatiotemporal
smoothing
of
calcium
measurements
in
dendritic
trees.”
PLoS Computational Biology, 8:3,
e1002408 (2012).
- R. van
den Berg, M.
Vogel,K. Josić, and W. Ma. “Optimal
inference
of
sameness.” Proceedings of the
National Academy of Sciences ,
109:8, 3178- 3183 (2012).
- J. Trousdale,
Y. Hu, E.
Shea-Brown, and K. Josić. “Impact
of
network
structure
and
cellular
response
on
spike
time correlations.” PLoS
Computational Biology 8(3):
e1002408.
(2012).
- R. Rosenbaum
and K. Josić. “Membrane
potential
and
spike
train
statistics
depend
distinctly
on
input
statistics.” Physical Review E,
84:5,
article
051902
(2011).
- K. Josić, W.
Ott, J. M.
Lopez, L.-J. Shiau and M. Bennett. “Stochastic delay accelerates signaling in
gene networks.” PLoS
Computational Biology, 7(11): e1002264.
doi:10.1371/journal.pcbi.1002264 (2011).
- Y. Wang, B.
Iliescu, J. Ma,
K. Josić and V. Dragoi. "Adaptive
changes in neuronal synchronization in macaque V4".
Journal
of Neuroscience 31:37, 13204-13213 (2011).
-
- A. Kumar and
K. Josić. Reduced
models
of
networks
of
coupled
enzymatic reactions.
Journal of Theoretical Biology 278:1, 87-106 (2011)
- R. Rosenbaum,
J. Trousdale
and K. Josić. The effects of pooling on spike train
correlations, Frontiers in Neuroscience 5:58. doi:
10.3389/fnins.2011.00058 (2011) (2011).
- Democratization in a
passive dendritic tree: an analytical investigation
Journal of Computational Neuroscience, vol. 25:2, 228–244 (2008)
- Learning by structural
remodeling in a class of single cell models Journal of Computational Neuroscience
vol. 25:2, 282–295 (2008)
- Analysis of a Renormalization Group
Method for Solving Perturbed Ordinary Differential Equations Physica D 237: 8, 1029– 1052 (2008)
- Unstable Solutions of
Non-autonomous Linear Differential Equations SIAM
Review
vol. 50, 570–584 (2008)
- Correlation between neural
spike trains increases with firing rate Nature
448, 802–806 (2007).
- Universal properties of
correlation transfer in integrate-and-fire neurons.
Physical Review Letters vol. 100, 108102 (2008).
- Branching Dendrites with
Resonant Membrane: A sum-over-trips approach.
Biological Cybernetics vol. 93, 91–108 (2007).
- Non-uniform decay of
predictability and return of skill in stochastic oscillatory models Physica
D
vol.
232(2),
116–127(2007).
- Is there a nucleotide
composition constraint on genome sequences? Computational
Biology and Chemistry, 32, 147 (2008).
- Network structure and
spatiotemporally symmetric dynamics Physica D 224(1-2),
52-68 (2006)
- Neuronal firing in the
presence of stochastic trains of strong synaptic inputs
Neural Computation 19, 1251-1294 (2007).
- Toward blueprints for network
architecture, biophysical dynamics, and signal transduction
Proceedings of the Royal Society A 364, 3301-3318 (2006).
- A mathematical model of cancer
radiovirotherapy Mathematical Biosciences, vol. 199,
issue 1, pp. 55-78 (2006) (Epublished Dec 22, 2005).
- Rotation Sets for Networks of
Circle Maps Chaos, vol. 16, issue 1, p. 015115 (2006).
- Winding Numbers and Average
Frequencies in Phase Oscillator Networks
Journal of
Nonlinear Science, vol. 16, issue 4, pp. 201-231, (2006).
- Singular perturbations of
quadratic maps International Journal of Bifurcations and
Chaos, vol. 14:1, pp. 161-171 (2004).
- Playing catchup with iterated
exponentials American Mathematical Monthly, 111:8, pp.
704-709, October, 2004.
- The geometry of chaos
synchronization Chaos, vol 13:1 pp. 151-164 (2003).
- A geometric theory of chaotic
phase synchronization Chaos, vol 13:1 pp. 247-258
(2003).
- Limits to the Experimental
Detection of Nonlinear Synchrony Physical Review E, 65,
article 046225 (2002).
Book chapters and encyclopedia
entries
Refereed
entries
are marked with a star (*).
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______________________________________________________________________________________________
Current Address: Department of Mathematics, PGH Building, University of
Houston, Houston, Texas 77204-3008
Phone: (713) 743-3500 - Fax: (713) 743-3505
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